script_src/matlab/track_verification/extract_region.m File Reference

Functions
	center (1)
	center (2)
	track_from_entry (tmp(j,:), in)]
Variables
function	out
	tmp
for	j

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Function Documentation

center

(

2

)

center

(

1

)

Referenced by tracking::Hash_shelf::get_region().

track_from_entry	(	tmp(j,:)	,
		in
	)

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Variable Documentation

for j

Initial value:

 1:size(tmp,1)
        out = [out

Referenced by utilities::Accum_case::Accum_case(), utilities::Generic_wrapper_hdf::add_dset(), utilities::Wrapper_o_hdf::add_meta_data_list(), tracking::Accum_sofq::add_particle(), utilities::array_to_mat(), utilities::Accum_case::average(), utilities::Tuple< T, length >::clear(), tracking::Corr_goftheta::compute(), tracking::Corr_gofr::compute(), tracking::hash_case::compute_accum(), tracking::hash_box::compute_corr(), tracking::Hash_shelf::compute_corr(), tracking::hash_case::compute_corr(), utilities::Read_config::contains_key(), utilities::ND_Array< T, N >::cord_to_indx(), tracking::Corr_case::Corr_case(), tracking::Corr_gofr::Corr_gofr(), tracking::Corr_goftheta::Corr_goftheta(), utilities::Data_map::Data_map(), utilities::Tuple< T, length >::dist_sqr(), utilities::Tuple< T, length >::dot(), tracking::Track_box::extract_corrected_disp(), tracking::Track_box::extract_raw_disp(), tracking::wrapper_i_ning_hd::fill_data(), tracking::Hash_shelf::fill_in_neighborhood(), utilities::ND_Array< T, N >::fill_test(), iden::Iden::fill_wrapper(), iden::Gaussian_Kernel::Gaussian_Kernel(), utilities::Histogram::get_bin_edges(), tracking::hash_case::get_cum_disp(), utilities::Read_config::get_key_index(), tracking::Accum_sofq::get_magnitude_sqr(), tracking::hash_case::get_mean_disp(), tracking::Accum_sofq::get_q_vec(), tracking::Hash_shelf::get_region(), utilities::Read_config::get_value(), tracking::Hash_shelf::hash_function(), utilities::ND_Array< T, N >::increment_cord(), utilities::ND_Array< T, N >::indx_to_cord(), tracking::Hash_shelf::indx_to_tuple(), tracking::hash_case::init(), utilities::Tuple< T, length >::magnitude_sqr(), main(), utilities::Tuple< T, length >::make_unit(), mexFunction(), tracking::Track_shelf::msd(), tracking::Track_shelf::msd_corrected(), utilities::ND_Array< T, N >::ND_Array(), tracking::Corr_goftheta::normalize(), tracking::Corr_gofr::normalize(), utilities::Tuple< T, length >::operator*(), utilities::Tuple< T, length >::operator*=(), utilities::Tuple< T, length >::operator+(), utilities::Tuple< T, length >::operator+=(), utilities::Tuple< T, length >::operator-(), utilities::Tuple< T, length >::operator-=(), utilities::Tuple< T, length >::operator/(), utilities::Tuple< T, length >::operator/=(), utilities::operator<<(), utilities::Tuple< T, length >::operator=(), utilities::Tuple< T, length >::operator==(), tracking::Corr_case::out_to_wrapper(), utilities::Histogram2D::output_to_wrapper(), utilities::Histogram::output_to_wrapper(), tracking::Track_box::output_to_wrapper(), utilities::Coarse_grain_array::output_to_wrapper(), iden::ParticleStatistics(), tracking::Track_box::plot_intensity(), utilities::Tuple< T, length >::print(), utilities::Svector< T >::print(), utilities::ND_Array< T, N >::print(), utilities::Read_config::print(), tracking::Master_box::print(), tracking::hash_case::print(), utilities::Array::print(), iden::Print2DKernel32f(), iden::Print2DKernel8u(), iden::PrintParticleData(), utilities::Wrapper_i_hdf::priv_init(), tracking::Master_box::priv_init(), tracking::Hash_shelf::priv_init(), utilities::Tuple< T, length >::prod(), utilities::Array::push(), utilities::Read_config::Read_config(), utilities::Array::set_array(), tracking::Track_shelf::set_corrected_disp_to_cell(), tracking::Track_shelf::set_raw_disp_to_cell(), tracking::Track_box::split_to_parts(), tracking::Accum_sofq_ND::step_indx(), stringtok(), utilities::Tuple< T, length >::sum(), tracking::Hash_shelf::test(), iden::Image2D::trim_max(), tracking::Corr_goftheta::trim_nhood(), utilities::Tuple< T, length >::Tuple(), vec_print2(), utilities::vector_to_mat(), utilities::Wrapper_i_matlab::Wrapper_i_matlab(), utilities::Accum_case::~Accum_case(), tracking::Corr_case::~Corr_case(), tracking::hash_case::~hash_case(), and tracking::Master_box::~Master_box().

out

Initial value:

 extract_region(in,center,range, plane)
    
    tmp = in(in(:,3)==plane,:)

Referenced by utilities::Tuple< T, length >::dist_sqr(), and utilities::DT2str_s().

tmp

Initial value:

 tmp(tmp(:,1)<(center(1)+range) &tmp(:,1)>(center(1)-range)...
                &tmp(:,2)<(center(2)+range) &tmp(:,2)>(center(2)-range),:)

Referenced by utilities::Cell_matlab::add_array(), utilities::Coarse_grain_array::add_to_element(), tracking::Track_box::at(), tracking::Hash_shelf::compute_corr(), tracking::particle_base::compute_phi_6(), utilities::ND_Array< T, N >::cord_to_indx(), tracking::Track_shelf::corrected_tracks_out(), utilities::Tuple< T, length >::direction(), utilities::Histogram::display(), tracking::Corr_gofr::display(), tracking::Accum_sofq::display(), utilities::Tuple< T, length >::dot(), tracking::wrapper_i_ning_hd::fill_data(), utilities::Histogram::get_bin_edges(), tracking::hash_case::get_cum_disp(), utilities::Wrapper_i_matlab::get_data_types(), utilities::Wrapper_i_hdf::get_dims(), tracking::hash_case::get_mean_disp(), gnuplot::Gnuplot::get_program_path(), tracking::Hash_shelf::get_region(), tracking::particle_base::get_theta(), gnuplot::Gnuplot::init(), utilities::Tuple< T, length >::magnitude_sqr(), main(), utilities::Tuple< T, length >::make_unit(), mexFunction(), mysortobj::operator()(), utilities::Tuple< T, length >::operator*(), utilities::Tuple< T, length >::operator+(), utilities::Tuple< T, length >::operator-(), utilities::Tuple< T, length >::operator/(), tracking::Corr_goftheta::out_to_wrapper(), tracking::Corr_gofr::out_to_wrapper(), tracking::Accum_sofq::out_to_wrapper(), gnuplot::Gnuplot::plot_image(), gnuplot::Gnuplot::plot_x(), gnuplot::Gnuplot::plot_xy(), gnuplot::Gnuplot::plot_xy_err(), gnuplot::Gnuplot::plot_xyz(), utilities::Tuple< T, length >::prod(), tracking::Hash_shelf::push(), tracking::Hash_shelf::rehash(), tracking::Track_shelf::set_corrected_disp_to_cell(), gnuplot::Gnuplot::set_GNUPlotPath(), tracking::Track_shelf::set_raw_disp_to_cell(), utilities::Attr_list_hdf::set_value(), tracking::Hash_shelf::shelf_to_list(), tracking::Track_box::split_to_parts(), utilities::str2VT_s(), utilities::Tuple< T, length >::sum(), and utilities::Wrapper_i_plu::Wrapper_i_plu().